The 18S ribosomal RNA targeted loci project is a RefSeq curated data set sourced from INSDC records. At a minimum the sequence contains most of the variable V4 region and part of the V5 region and each record contain a collection identifier (predominantly type material) from a public collection. The presence of the 18S signature has been verified by the ribovore pipeline (https://github.com/nawrockie/ribovore) using hidden Markov and covariance models. Other verification steps for example checking for vector sequences, too many ambiguous nucleotides, and misassembled sequences are also included. SSU RefSeq accessions (NG_ ) include sequences mostly obtained from type specimens and a few from reference specimens. Type and reference identifiers are curated by NCBI Taxonomy. The collection source of type material is indicated in each record and collection acronyms follows the collection codes maintained at https://www.ncbi.nlm.nih.gov/biocollections/. All sequences will have the same project ID and can be found as such. Database URL: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA39195.
Link GBIF portal : https://www.gbif.org/dataset/3bfbda20-1a91-4cf9-992f-bc1e9e5b7dad
Key words
No information
Field
continental
marine
Protocole
No information
Geographic extent
No information
Contacts
Type
Organization
Name
Fournisseur
National Center for Biotechnology Information
ROBBERTSE Barbara
Fournisseur
PATRINAT (OFB-MNHN-CNRS-IRD)
Publication dates :
First diffusion : 14/03/2023
Last update : 30/11/2023
Species list found :
Filter by Kingdom
Filter by Class
Filter by Order
Filter by Family
Scientific name
CD_NOM
Kingdom
Class
Order
Family
Date of first observation
Date of last observation
Sheet
Chiffres clés :
1 données
1 espèces
1 taxons
Répartition des données par groupes taxonomiques :
French Version
